2015 BGRI Poster Abstracts

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Displaying 21 - 30 of 415

Utilization of Jordanian durum wheat (Triticum turgidum ssp durum) landraces for crop improvement in dry areas

Durum wheat (Triticum turgidum subsp. durum) landraces are rapidly disappearing from the main wheat production areas in the Fertile Crescent. Such local landraces are most likely contain geographically specific, ectopically adapted alleles or gene complexes for their harsh environments. A panel of 156 durum wheat landraces and released varieties were assembled from historical collections deposited in national and international gene banks and from a recent active collection mission from selected areas across Jordan. The panel were evaluated under field conditions in two different locations for one growing season. Data for days to heading, plant height, peduncle length, number of spikes spike length, spike weight, grains number, grains weight, number of kernels per spike and thousand-kernel weight were recorded. Results indicate the existence of a wide variation between the tested genotypes for all tested agronomical traits. For heading date, the Jordanian landrace "JDu103" was the earliest under dry environment conditions. Regarding grains weight and spike weight, the Jordanian landrace "JDu105" produced the highest mean value under humid conditions. Another landrace "JDu46" produced the longest spikes and the highest TKW mean value, while the Jordanian landrace "JDu105" produced the heaviest spikes weight mean value, while "JDu100" produced the highest grains number. For molecular analysis, total genomic DNA was extracted from each genotype and then used for SNP genotyping using Illumina iSelect wheat 90k SNP chip. Structure analysis showed that the analyzed durum wheat panel can be divided into three genetically distinct subgroups. The GWAS analysis identified 93 significant markers-traits associations for multiple traits with two QTLs located at 7A and 7B, which seems important for TKW in durum wheat under dry environments. In conclusion, the Jordanian landraces used in this study showed wide genotypic and phenotypic variability, which can be considered by plant breeders for their future use in breeding programs.

Primary Author: Al-Abdallat, Faculty of Agriculture, The University of Jordan

Keywords: drought, QTL

High yielding bread wheat cultivar Alaa with potential to retard rust spread in rain-fed and irrigated zones of Iraq

Rusts continue to cause significant losses in grain yield of wheat in Iraq. Substitution of susceptible cultivars with resistant ones is an important step in reducing the vulnerability of the wheat crop. The present study represents a breeding program to develop high yielding bread wheat cultivars with resistance to brown rust and yellow rust. The performance of 265 spring wheat genotypes representing an international bread wheat-screening nursery from CIMMYT were evaluated in different agro-ecological zones in comparison with local commercial cultivars. Adult plant stage screening of the materials for brown rust and yellow rust reaction under inoculated conditions for three successive seasons identified 29 resistant and 59 moderately resistant genotypes, and 79 genotypes out-yielded the local cultivars. The selected lines were comprehensively evaluated for grain yield potential and disease response in different locations and agro-systems. Among 13 genotypes line 172 was selected for higher grain yield than local commercial cultivars in the presence and absence of both diseases. Mean coefficients of infection on line 172 were 0.57 and 5.35 to brown rust and yellow rust, respectively. It was also moderately resistant to common bunt. Yield potential of the new cv. Alaa was 9-20% higher than the commercial local cultivars Araz, Tamuz 2 and Adana. Alaa was registered and released by the National Committee for Registration and Release of Agricultural Cultivars according to order no. 39, 30/10/2017 as a new cultivar with high yield potential and resistance to brown rust and yellow rust. Great emphasis was made on multiplication and delivery of seeds to farmers. Grain yield potential of Alaa on a farm scale is 3,372 Kg/ha under rain-fed conditions and 5,024 Kg/ha under irrigated conditions.

Primary Author: Al-Maaroof, Sulaimani University,IKR, Iraq

Keywords: rusts, Iraq

Genetic variation in Puccinia striiformis f.sp. tritici populations on wheat in Iraq

This study was conducted to detect new races of Puccinia striiformis f. sp. tritici in Iraq. Trap nurseries were planted in different locations throughout the main wheat growing areas. Stripe rust severities and infection types on each genotype were recorded at different stages of crop development. Yellow rust samples collected from commercial wheat fields at different locations were sent to the Global Rust Center for race analysis. Local adult plant tests indicated virulence for host genes Yr2, Yr6, Yr7, Yr9, Yr18, YrA, Yr20, Yr21, Yr27, Yr28, Yr29, and Yr31 at the adult plant stage in Sulaimania, and virulence to Yr2, Yr6, Yr7, Yr9, YrSD, YrSP, YrA, Yr21, Yr27, Yr28, and Yr31 at Nineveh. Virulence on lines carrying Yr5, Yr6, Yr7, Yr9, Yr20, Yr21, Yr27, Yr28 and Yr31 were recorded in Babylon and to Yr2, Yr5, Yr6, Yr7, Yr9, Yr18, YrA, Yr20, Yr25, Yr28, Yr29, and Yr31 at Diyala. Of 21 YR samples sent to GRRC for race analysis, cultures were recovered from ten. Two Pst pathotypes (races) were identified; one was virulent to Yr2, Yr6, Yr7, Yr8, Yr9, Yr27, and AvS whereas the other had additional virulence to Yr25 (Strubes Dickkopf). None was virulent for Yr5. Both pathotypes were aggressive based on Milus et al. measures.

Primary Author: Al-Maaroof, Sulaimani University, Iraq

Keywords: Iraq, genetics, stripe rust

Survey of wheat stem rust Puccinia graminis f. sp. tritici in Jordan

Studies on whet stem rust (WSR) in Jordan are considered to be old. There was only one study conducted in the late 1980's by Abu-Blan and Duwayri (1989) to evaluate the infection of wheat cultivars with black stem rust disease (Puccinia graminis f. sp. tritici). Recently, reports of stem rust were published in Israel and Lebanon in 2010 and first report of Ug99 was reported in Egypt in 2014. The objectives of our research are to: (i) survey wheat growing areas for WSR in Jordan during the years 2017-2020, (ii) identification of WSR races isolated from Jordan morphologically and molecularly, (iii) analyze rust populations in terms of their response to known differential sets, pathotype distribution and diversity, (iv) screening the response of Jordanian wheat germplasm to the identified WSR strains, and (vi) study the population diversity of WSR races using RT-PCR and SNP genotyping. In 2017 a total of 270 fields of wheat and barley in the wheat and barley growing areas in Jordan were surveyed from March-May. The survey covered northern, middle, and southern parts of Jordan (arid and semi-arid regions). Altitude, longitude, and latitude data was recorded. Only few WSR pustules (n=4) were collected because the environmental conditions were not suitable for the disease to develop. On the other hand, wheat stripe rust was very common in the wheat growing areas mainly at the southern parts of the country. Other fungal plant pathogens were also reported including smuts, spots, blotches, powdery mildew, crown rot, fusarium head blight, and flag smut.

Primary Author: Alananbeh, The University of Jordan


Genetic protection of wheat from rusts and development of resistant varieties in Russia and Ukraine

Leaf rust represents the major threat to wheat production in Russia and Ukraine. It has been present for many years and epidemics occur in different regions on both winter and spring wheat. In some regions there is evidence of more frequent epidemics, probably due to higher precipitation as a result of climate change. There is evidence that the virulence of the leaf rust population in Ukraine and European Russia and on winter wheat and spring wheat is similar. The pathogen population structure in Western Siberia is also similar to the European part, although there are some significant differences based on the genes employed in different regions. Ukrainian wheat breeders mostly rely on major resistance genes from wide crosses and have succeeded in developing resistant varieties. The North Caucasus winter wheat breeding programs apply the strategy of deploying varieties with different types of resistance and genes. This approach resulted in decreased leaf rust incidence in the region. Genes Lr23 and Lr19 deployed in spring wheat in the Volga region were rapidly overcome by the pathogen. There are continuing efforts to incorporate resistance from wild species. The first leaf rust resistant spring wheat varieties released in Western Siberia possessed gene LrTR which protected the crop for 10-15 years, but was eventually broken in 2007. Slow rusting is being utilized in several breeding programs in Russia and Ukraine, but has not become a major strategy.

Primary Author: Alexey Morgounov, CIMMYT-Turkey


Wheat rusts status and population structure across Pakistan during wheat growing seasons 2015-16 and 2016-17

Considering the importance of wheat rust diseases in Pakistan and the recent identification of yellow rust pathogen (Puccinia striiformis f. sp. tritici) centre of diversity in Pakistan, the present study was designed to assess the status of three wheat rusts across the country during 2015-16 and 2016-17 and analyze the population structure of P. striiformis f. sp. tritici . A total of 451 fields (from 68 districts) were surveyed during 2016 and 480 fields (from 69 districts) during 2017. A high yellow rust pressure was present during 2016 throughout Pakistan, while it was predominant only in the Northern half during 2017. Leaf rust was present in the central part of the country, while stem rust was only found in the south. In Sindh province (located in the south), yellow rust was reported unexpectedly with high severity (>60%) on varieties like Kiran and Galaxy during both the years. A set of 513 samples of P. striiformis were genotyped with microsatellite markers to assess the population diversity and spatial structure. and infer on the cause of epidemics in the Sindh province. Population genetics analyses confirmed a recombinant population structure across all locations except the Sindh province, where relatively lower diversity and lack of recombination signature was revealed. At least five genetic groups were identified in the overall population, which were found across all locations, except Sindh province where one of the genetic groups was predominant. The P. striiformis population from Sindh province with low diversity that caused unexpected epidemics in a relatively warmer region needs to be further investigated for specific adaptation traits. Our results confirmed the high diversity across Pakistan, which lies in the Himalayan centre of diversity of the pathogen. This high diversity was present in locations without the presence of alternate host (Berberis spp.) and could potentially be associated with regular migrants from the Berberis zone into the whole country.

Primary Author: Ali, The University of Agriculture, Peshawar, Pakistan


Diversity of Puccinia spp. on wheat, grasses and Berberis spp. in the Himalayan center of diversity of Puccinia striiformis f. sp. tritici

The Himalayan and near Himalayan region of Pakistan, China and Nepal was recently identified as the center of diversity of Pst. The Pakistani Himalayan populations were shown to be recombinant and possibly maintained through sexual reproduction on the alternate host, Berberis spp. To examine the role of Berberis spp. in supporting Puccinia spp. in the Himalayan region of Pakistan, 274 pycnial/aecial-infected Berberis leaves and 16 grass samples with uredinial infections were collected in the region from 2012 to 2014. Amplification of infected grass and Berberis spp. samples with EF, ITS region, and β-tubulin primers and subsequent species identification based on comparisons of the sequences to sequences in GenBank identified at least five Puccinia spp. viz., P. brachypodii, putative P. coronata-loli and P. coronati-agrostis, P. striiformis f. sp. dactylis (P. striiformoides), and P. striiformis on Berberis and grasses. This infers a role of Berberis as alternate hosts to Puccinia spp. in the Himalayan region of Pakistan, and in contributing to the overall diversity of these species in the region. Microsatellite characterization of Pst samples collected on wheat in 2013 and 2014 indicated an overall high diversity and recombinant population structure in the region. However, the low frequency of wheat-infecting P. striiformis isolates obtained from Berberis spp. necessitates ongoing investigation.

Primary Author: Ali, The University of Agriculture, Peshawar, Pakistan

Keywords: stripe rust, barberry, Nepal

Comparative analysis of rust resistant and susceptible wheat varieties in Pakistan

To reduce losses caused by rusts, regular and timely replacement of susceptible varieties with new high yielding, rust resistant varieties must occur. Data from a farmer survey carried out across Pakistan (Punjab, Sindh, KPK and Baluchistan) in 2014 enabled an analysis of the uptake of rust resistant variety NARC 2011. The empirical results indicated that the major sources of information that farmers obtained about NARC 2011 were research stations (83%), seed companies (7%) and fellow farmers (5%). Although production inputs were applied equally to both rust resistant NARC 2011 and rust susceptible wheat varieties the average yield of NARC 2011 (5,063 kg/ha) was superior to high yielding but rust susceptible varieties (4,446 kg/ha). Quality attributes of NARC 2011, including taste, color, dough kneading and chapatti making properties, were preferred by >70% of farmers). Seed availability and accessibility of NARC 2011 were major issues. Farmer awareness of rusts, especially the threat of exotic Pgt race Ug99, needs to be improved.

Primary Author: Ali, International Maize and Wheat Improvement Center (CIMMYT) Pakistan Office

Keywords: Pakistan, varieties, ug99

Assessment of slow rusting of landraces of bread wheat to Puccinia striiformis f.sp. tritici under artificial field inoculation

Yellow rust caused by Puccinia striiformis f.sp. tritici, is the most devastating fungal disease of wheat, especially in CWANA region. Growing cultivars with durable resistance is the most economical control measure. A field study was conducted to evaluate 500 bread wheat landraces along with the susceptible control ?Morocco? using artificial inoculation under field conditions at Tel Hadia, Syria during 2010-11 and 2011-12 growing seasons. The most prevailing yellow rust virulent race 70E214 was used for artificial inoculation. The disease scoring started when the disease severity was more than 50 % on the leaves of the susceptible check ?Morocco? and continued for four scorings at the intervals of 7 days. Slow rusting resistance was assessed based on the development of disease over time using the Area under Disease Progress Curve (AUDPC), Coefficient of Infection (CI), Final rust Severity (FRS), Infection Rate ?(r)? and Relative Resistance Index (RRI). None of the landraces showed immune reaction and 10% showed lowest values for all parameters, suggesting that resistance in these landraces was controlled by major genes. Approximately 65% of landraces were marked as having different levels of slow rusting and 25% were highly susceptible. Cluster analysis based on partial resistance parameters revealed two major clusters: Susceptible and low level of slow rusting were grouped in the first cluster; Resistant, high level and moderate level of partial resistance were grouped in the second cluster. By comparing the results obtained from RRI and others parameters, we found that landraces with very low values for all parameters exhibited high RRI value of 9, while those that showed high, moderate and low levels of slow rusting, had RRI ranges of 8-9, 7-8 and 5-7, respectively. The landraces with maximum values from each parameter showed very low RRI values of less than 5.

Primary Author: Alo, ICARDA

Keywords: bread wheat

SNP discovery and genotyping of wheat-Dasypyrum villosum disomic addition lines by genotyping-by-sequencing (GBS) to facilitate identification and introgression of novel stem rust resistance genes

Most accessions of Dasypyrum villosum (2n = 2x = 14), a tertiary gene pool of wheat, were resistant in previous tests with a collection of Pgt races, including TTKSK. In order to transfer novel resistance genes with minimum linkage drag into wheat, chromosome-specific markers linked to the resistance loci would be useful. However, the currently available SNP and sequence information for D. villosum is very limited. Hence, developing SNP markers and genotyping D. villosum will aid in transferring stem rust resistance genes to wheat. We used genotyping-by-sequencing (GBS) to sequence a complete set of Chinese Spring (CS)-D. villosum addition lines (1V#3 to 7V#3) as well as CS and several D. villosum accessions to map D. villosum SNPs on each chromosome. We have also produced TTKSK-resistant CS-D. villosum amphiploids using other D. villosum accessions assuming they could carry different stem rust resistance genes.

Primary Author: Ando, Department of Crop and Soil Sciences, Washington State University, USA

Keywords: stem rust, resistance SNP, genotyping