stripe rust

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Occurrence of the Warrior Race of Wheat Stripe Rust (Puccinia striiformis f. sp. tritici) in Egypt, 2015

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici, [Pst] is a widespread and damaging disease of wheat (Triticum aestivum L.), causing significant losses in yield and quality. During the 2015, eight stripe rust physiological races were identified in greenhouse tests i.e. 0E0, 6E4, 70E20, 128E28, 134E244, 143E245, 250E174, and 450E214. Race 0E0 was the most common and avirulent race, and races 143E245, and 450E214 had high virulence on most of tested Yr resistance gene wheat lines. In the same season, an unusual stripe rust infection occurred in spring wheat at Sakha region in Egypt. Some of the most important commercial cultivars such as (Misr 2, Giza 168 and Sakha 61), known as resistant to the previously characterized races of Pst in Egypt have become susceptible under field conditions. Infections of stripe rust was observed on some wheat lines with Yr genes previously known to be resistant, such as Yr1, Yr17 and Yr32, in a yellow-rust trap nursery at Sakha (30.601400? N, 31.510383? E), northern Egypt. Independent race analysis of collected samples from four governorates i.e. Kafrelsheikh, Al-Sharqia, Dakahleia and Damietta at Sakha Agricultural Research Station in Kafrelsheikh confirmed the detection of a new Pst race in Egypt. Aggressive races with virulence to Yr27 were detected on differentials with Yr27 (Yr27/6*Avocet S), and (Ciano 97) during the 2012 in Egypt. In addition, the Warrior race (virulent on: Yr1, Yr2, Yr3, Yr4, Yr6, Yr7, Yr9, Yr17, Yr25, Yr32, and YrSp) was observed in the 2015 crop season, which indicated continued changes in the Pst the population. In Europe, the Warrior race first identified in 2011 in the United Kingdom, has caused significant change in yellow rust susceptibility of several varieties of both wheat and triticale. In a conclusion, some of wheat cultivars, known to be resistant, were shifted to susceptible due to these new races.

Shahin
Wheat Disease Research Department, Plant Pathology Research Institute, Agricultural Research Center, Egypt.
Co-authors: 
Wasif Youssif, Mohamed Hasan
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Primary Author First Name: 
Atef
Displayed onsite?: 
No

Genome-Wide Association Study (GWAS) of resistance to stem and stripe (yellow) rust in Iranian wheat cultivars and elite lines

Rust diseases in wheat are the major threat to wheat production and yield gains. The breakdown in resistance of certain major genes and new emerging aggressive races of rusts are causing serious concerns in all main wheat growing areas of the world. Therefore, it is the need of the hour to search for new sources of resistance genes or QTL's for effective utilization in future breeding programs. In total 100 wheat genotypes were evaluated for seedling and adult-plant resistance to stem rust races TKTTF and TTKSK at Tel Hadya-Syria, and Njoro-Kenya, and Kelardasht-Iran. Evaluation to Yr27 virulent stripe rust race was carried out at Tel Hadya and Terbol-Lebanon research stations. In this study we used genome wide association studies (GWAS) to identify markers or QTLs linked to stem rust and stripe rust races using Diversity Arrays Technology (DArT?) in selected 35 Iranian wheat genotypes. The association of markers and phenotypes was carried out using a unified mixed-model approach (MLM) as implemented in the genome association and prediction integrated tool (GAPIT). Out of 3,072 markers, 986 were polymorphic and used for marker trait associations. A total of 44 DArT markers were identified to be significantly (p<=0.01) associated with studied traits in 16 genomic regions 1A, 1B, 2A, 4A, 6A, 7A, 1B.1R, 2B, 3B, 4B, 5B, 5B.7B, 6B, 7D and an unknown region. Among associated markers, 34 were linked to stem and nine to stripe rust. They were found on 16 genomic regions on chromosome arms 1A, 1B, 2A, 4A, 6A, 7A, 1B.1R, 2B, 3B, 4B, 5B, 5B.7B, 6B, 7D and an unknown region. Associated markers explained phenotypic variation ranging from 21 to 65%. In addition to validation of previously identified genes, this study revealed new QTL's linked to stem and stripe rust which will assist breeders to develop new resistant varieties.

Tehseen
Department of Field Crops, Ege University, Izmir, Turkey
Co-authors: 
Kumarse Nazari, Mehran Patpour, Davinder Singh, Aladdin Hamwieh
Poster or Plenary?: 
Poster
BGRI Year: 
2018
geographic_area: 
Primary Author First Name: 
Muhammad Massub
Displayed onsite?: 
No

Occurrence of wheat rusts in Algeria and strategies to reduce crop losses

Wheat is the world's most widely grown food crop. New races of pathogens frequently overcome current resistant varieties. To address this issue Algeria has strategies for immediate action, medium term protection and long-term research efforts to develop new resistant wheat varieties. Yellow rust is a very important disease of wheat in Algeria where 60% of the wheat crop is grown under cooler high elevation climate conditions (2?C ? 15?C). Crop losses reached 80% during the 2004/2005 epidemics. Strategies adopted to reduce the risk of wheat rust are ongoing yearly surveillance, awareness, and early warning systems to farmers; and breeding and developing new varieties with high yield potential and durable resistance. Several highly resistant varieties (Tiddis, Boumerzoug, Massine, Akhamokh and Yacine) were selected and promoted following seed multiplication and commercial release. They are also widely used in crosses to improve local varieties. The newly released varieties are being distributed to farmers that grow susceptible varieties. This gene deployment will provide a natural barrier between eastern to western Algeria to intercept the major direction of air flow. Fungicide control is now routinely applied soon after rust detection or even preemptively. The level of awareness for wheat rusts across Algeria is now very high. Training among farmers for visual detection is widely promoted by plant protection and extension services. These strategies have been very effective in mitigating the threat of wheat stripe rust such that losses have not exceeded 10% over the last five years.

Bentounsi
University Mentouri of Constantine, Algeria
Keywords: 
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Primary Author First Name: 
Amira
Displayed onsite?: 
No

GENETIC MAPPING OF SEEDLING AND ADULT PLANT RESISTANCE FOR STRIPE RUST IN SPRING BREAD WHEAT (TRITICUM AESTIVUM L.)

Stripe rust caused by Puccinia striiformis f.sp.tritici, is one of the major diseases of wheat in the world. Experiments were carried out at two sites in Ethiopia (Kulumsa and Meraro) during the 2015 cropping season to evaluate the response of 198 elite bread wheat genotypes and two checks to the prevailing races of stripe rust at adult plant and seedling stage. The genetic profile of these genotypes was assessed using 13006 SNP markers and an association mapping was explored to determine marker?trait association. About 72.5% and 42.5% of the lines exhibited resistance at Kulumsa and Meraro, respectively. Out of 198 genotypes tested in the greenhouse, 31% exhibited common resistance for Kubsa and mixed stripe rust isolate. Only 8966 of the SNPs were polymorphic, only these were used for association mapping analysis. These markers spanned an average density of 3.47 cM per marker, with the poorest density on the D genome. Almost half of these markers were on known chromosomes, but had no position on the consensus map of bread wheat. Analysis of population structure revealed the existence of three clusters and the estimated genomic wide Linkage Disequilibrium (LD) decay in this study ranged from 0 to 50 cM. 53 SNPs in ten genomic regions located on wheat chromosome 1AL, 2AL, 2BL, 2DL, 3BL, 4BL, 4DL, 5AS, 7AL and 7BL were identified. Thirty nine SNP markers in five genomic regions at Kulumsa and 14 SNP markers in six genomic regions at Meraro explained more than 25.5% and 35.1% of phenotypic variability respectively. For seedling stage, 21 markers in ten genomic regions located on wheat chromosomes 1B, 2A, 2B, 3A, 3B, 4B, 4D, 5A, 6B and 7B were associated with resistant. These loci may be useful for choosing parents and incorporating new resistance genes into locally adapted cultivars.

Isehtu
Ethiopian Institute of Agricultural Research (EIAR)
Poster or Plenary?: 
Poster
BGRI Year: 
2018
geographic_area: 
Primary Author First Name: 
Yewubdar
Displayed onsite?: 
No

Barberry plays a role in spreading inoculums to wheat fields to cause stripe rust in China

Wheat stripe rust, caused by basidiomycete fungus Puccinia striiformis f. sp. tritici (Pst), is a damaging disease worldwide. The recent discovery demonstrated the fungus depends on living wheat and aecial hosts, mainly barberry (Berberis) species, to complete its life cycle. In China, we determined that, under natural conditions, the sexual cycle of Pst occurs based on collections of Pst isolates from the diseased barberry in the past three years. However, no direct evidence to support whether barberry plays a role in spreading inoculums to wheat field to cause stripe rust was detected. In the present study, we recovered 103 Pst samples from natural-infected B. shensiana in the western Shaanxi in spring 2016, and also collected 107 Pst isolates from neighboring wheat fields. Phenotype and genotype of the two Pst populations were tested using a set of Chinese differential hosts for Pst and SSR markers, respectively. The phenotype tests showed that 57 race types produced from the barberry-derived Pst populations, consisting of 58 known races, such as CYR 34, CYR32, G22-14, and Su11-14-3, and 45 new races. Many of the two Pst populations shared the same race types. The genotype tests indicated the barberry-derived Pst population produced a rich genotype, obviously higher than the wheat-derived Pst populations. The seven same genotypes were found on 40 isolates of the former and 26 of the latter. Our results provide evidence to support that sexual cycle of Pst occurs regularly in nature in China and that barberry provides inoculums to neighboring wheat fields, triggering stripe rust infections in the spring. This could be a reason why the Chinese Pst populations represent extreme genetic diversity.

Zhao
College of Plant Protection, Northwest A&F University, China
Co-authors: 
Yuanyuan Zhao, Shuxia Zuo, Dan Zheng, Lili Huang, Zhengshen Kang
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Abstract Tags: 
geographic_area: 
Primary Author First Name: 
Jie
Poster ID number: 
244

Isolation of wheat Yr26 sheds new insights into wheat resistance to Puccinia striiformis infection

Wheat cultivation in many regions faces threats by devastating fungal infections. However, wheat cultivar 92R137 shows resistance to Puccinia striiformis infection. To isolate the stripe rust resistance gene Yr26, an integrated transcriptomic and comparative genomics approach was undertaken. Near-isogenic lines of wheat (carrying Yr26 or not) infected with two Puccinia striiformis f. sp. tritici (Pst) (Virulence or avirulence to Yr26) were analysed in a dual detailed time series RNA-seq study. The emerging IWGSC refseq v1.0 genome assembly sequence serves as a valuable template and was also used for comparative genomics studies of the gene candidate region with the genome sequences of close relatives and wheat progenitors. Using bulked segregant analysis (BSA) to identify polymorphic SNPs between parent and resistant DNA (R-bulk) and susceptible DNA (S-bulk), flanking markers for Yr26 were identified. These two markers were mapped to the Chinese spring reference genome sequence, spanning a region of about 250 kb. The synteny analysis of this candidate region in CS chr1B with chr1A, chr1D, Wild Emmer Wheat (Td_chr1A and Td_chr1B) and Barley (chr1H) identified three candidate Yr26 genes. To detect gene candidates a dual time series RNA-seq analysis was performed. Genes differently expressed between rust susceptible (NIL-S) host lines and rust resistant (NIL-R) lines, carrying the Yr26 candidate gene were analysed. Both lines were inoculated with Pst carrying different avirulence factors (Pst-CYR32 and Pst-V26), compatible or incompatible with the corresponding wheat lines. Differential gene expression analysis (DEG) between compatible and incompatible interaction revealed DEGs in the wheat genome and in the Pst genome. From a network analysis of both wheat and Pst genes, we inferred connected co-expressed modules. Resulting modules showed particular enrichments for disease resistance, defense response to fungus and cell wall components.

Zeng
Northwest A&F University
Keywords: 
Resistance Gene Tags: 
Co-authors: 
Dejun Han, Jia Guo, Manuel Spannagl, Jianhui Wu, Aizhong Cao, Peidu Chen, IWGSC, Lili Huang, Jun Guo, Klaus Mayer, Zhensheng, Kang
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Abstract Tags: 
Primary Author First Name: 
Qingdong

Virulence evolution of Puccinia striiformis f.sp. tritici on wheat in Kenya between 1970 to 1992 and 2009 to 2014

Emergence of new virulent races of Puccinia striiformis f. sp. tritici (Pst) to stripe (yellow) rust resistance genes in wheat (Triticum aestivum L.) has historically resulted in severe yield losses worldwide. We conducted a study to characterize the virulence profiles of Pst races prevalent in Kenya from historic (1970-1992) and recent collections (2009-2014). Pst isolates collected during surveys in Kenya were characterized at the Global Rust Research Centre (GRRC), Denmark. Yellow rust differential sets (wheat lines with known Yr resistance genes), and strain-specific sequence-characterized-amplified-region (SCAR) markers were used to group the Pst isolates as Pst1 or Pst2. Virulence to Yr1, Yr2, Yr3,Yr6, Yr7, Yr8, Yr9, Yr17, Yr25, Yr27, and the seedling resistance in AvocetS were detected. A total of 12 virulence profiles /races were detected in isolates obtained during 1970 to 1992, while six races were detected from samples collected between 2009 to 2014. In both periods, races with virulence profiles Yr2, Yr6, Yr7, Yr8, Yr25, Yr27, Avs and Yr2, Yr6, Yr7, Yr8, Yr17, Yr25, AvS were common. The SCAR results revealed that both Pst1 and Pst2 strains were present in the Pst isolates tested, Pst1 even in isolates from the 1970s. Additional isolates were also identified with neither Pst1 nor Pst2 profiles. From our findings, race analysis is key to understand the race diversity and pre-breeding efforts for effective resistance gene deployment.

Wamalwa
Egerton University Njoro, Kenya
Keywords: 
Co-authors: 
Ruth Wanyera, James Owuoche, Julian Rodriguez, Annemarie Justesen, Lesley Lesley, Sridhar Bhavani, Cristobal Uauy, Mogens Hovmøller
Poster or Plenary?: 
Poster
BGRI Year: 
2018
geographic_area: 
Primary Author First Name: 
Mercy
Displayed onsite?: 
No

The RES-WHEAT project: identification of resistance genes in durum wheat for an healthier and more sustainable agriculture

The recent emergence of new widely virulent and aggressive strains of rusts (particularly stripe and stem rust) is threatening Italian durum wheat (Triticum turgidum L. var. durum) production, especially under the trend of higher temperature and humidity. A big effort has been undertaken to explore the genetic variability for resistance to these fungal pathogens and discovering novel resistance genes. In particular, a wide set of tetraploid wheat lines was genotyped with several thousands of SNP markers and used for association mapping. This large collection consisted of a group of durum wheat cultivars, produced from the beginning of the last century up to now, a collection of wild emmer wheats (T. dicoccoides), and lines belonging to other wild and domesticated tetraploid subspecies, as a large untapped source of genetic diversity. In a tight cooperation with the University of Minnesota, this collection was evaluated for reaction to several races of stem and stripe rust pathogens in both controlled greenhouse and field conditions. Among the genotypes belonging to the collection are parents of segregating populations which were used for the validation of mapping results. Novel resistance loci were identified, that can be incorporated into new durum varieties through breeding programs. The QTLs found in this study, together with those available in literature, were projected to the recently sequenced durum wheat genome in order to define more precisely the chromosome regions and candidate genes involved in resistance to rusts. Lines which were resistant to multiple races of rust pathogens were also found among both T. dicoccoides and durum wheat cultivars as a source of resistance genes, whose cloning will be undertaken based on the results here obtained.
This study was supported by the Italian Ministry of Foreign Affairs and International Cooperation, with the special grant RES-WHEAT.

Mastrangelo
CREA-Research Centre for Cereal and Industrial Crops
Co-authors: 
Elisabetta Mazzucotelli, Oadi Matny, Antonietta Saccomanno, Raffaella Battaglia, Francesca Desiderio, Agata Gadaleta, Nicola Pecchioni, Pasquale De Vita, Giovanni Laido, Luigi Cattivelli, Brian Steffenson
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Primary Author First Name: 
Anna Maria
Displayed onsite?: 
No

Triticum araraticum: A source of leaf rust and stripe rust resistance genes

Stripe rust and leaf rust are two most widely distributed diseases of wheat despite the fact that major emphasis has been made globally to develop rust resistant varieties. The wild tetraploid wheat Triticum araraticum (AAGG) evolved in the eastern part of Fertile Crescent is a source of useful traits for the improvement of wheat including resistance to disease. T. araraticum acc. pau4692 and a derived advanced backcross introgression line (IL) in susceptible T. durum cv. Malvi local background showed high level of seedling resistance against Indian pathotypes of leaf rust and stripe rust. The F5 Single seed descent (SSD) population developed from the crosses between T. araraticum IL with T. durum cultivar PBW114 was screened with commonly prevalent pathotypes of leaf rust and stripe rust in India at the seedling stage. The genetic analysis indicated that the leaf rust resistance is conditioned by two genes and stripe rust resistance by a single gene. The SSR markers mapped on A and B genome were used for parental polymorphism along with resistant and susceptible bulks for leaf rust and polymorphic markers between bulks were used on the whole population. The molecular marker data using single marker analysis showed that leaf rust resistance genes were mapped on chromosome 2A and 7A linked to SSR markers Xwmc149 and Xbarc49, respectively. The genes have been temporarily named as LrAr1 and LrAr2. Bulked segregant analysis (BSA) for mapping stripe rust resistance is in progress.

Singh
School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana-141004 India
Co-authors: 
Ahmed Elkot, Satinder Kaur, Parveen Chhuneja
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Primary Author First Name: 
Rohtas
Displayed onsite?: 
No

Molecular screening and identification the carriers of effective Yr genes in wheat germplasm of Central Asia

Wheat rust diseases are a major cause of yield losses of this crop. Yellow (Puccinia striiformis f. sp. tritici) rust is of the most widespread and dangerous disease of wheat and is the major factor that adversely affects wheat yield and quality. The use of genetic host resistance is the most effective, economical and environmentally safe method of controlling stripe rust that allows elimination of fungicides and minimize crop losses from this disease. Due to the threat of the development of epiphytoties of rust disease it is necessary to identify new donors of resistance to yellow rust and to develop resistant wheat breeding material. In the present study, attention was drawn to the effective yellow rust resistance genes Yr5, Yr10 and Yr15, which were identified in the process of molecular screening of wheat germplasm. Genetic analysis using S23M41 molecular marker linked to Yr5 revealed the presence of this gene in 17 out of 136 promising lines. Thirteen genotypes screened with Xbarc8 generated the DNA fragment associated with Yr15. Three advanced lines with Yr10 were identified using the SCAR marker. Three lines carrying two Yr genes (Yr5 and Yr15) were detected. Combination of Yr5 and Yr10 were found in 15 wheat lines. We identified a number of wheat genotypes highly resistant to stripe rust, which could be further evaluated to release new resistant varieties or to be used in the breeding program.

Kokhmetova
Institute of Plant Biology and Biotechnology
Co-authors: 
Makpal Atishova, Aygul Madenova, Kanat Galymbek, Jenis Keyshilov, Hafiz Muminjanov, Alexey Morgounov
Poster or Plenary?: 
Poster
BGRI Year: 
2018
Primary Author First Name: 
Alma
Displayed onsite?: 
No

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