All BGRI Abstracts

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Mapping and validation of stripe rust resistance loci from wheat cultivar Centrum with SNP markers

BGRI 2018 Poster Abstract
Jingmei Mu State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi, P. R. China
Qilin,Wang, Jianhui, Wu, Qingdong, Zeng, Lili, Huang, Dejun, Han, Zhensheng, Kang, , , , , , , , , , , , , , , , , ,

The combination of several additive, partial resistance genes has been proposed as a preferred strategy to breed wheat cultivars with acceptable levels of durable resistance. The German winter wheat cv. Centrum has displayed high levels of adult plant stripe rust resistance (APR) in field environments for many years. One hundred and fifty one F2:7 RILs were developed from a cross between susceptible landrace Mingxian169 and Centrum to determine the inheritance of the APR resistance. The RILs and parents were evaluated for maximum disease severity (MDS) in the field during the 2015-2016 and 2016-2017 cropping seasons. Affymetrix 35K single nucleotide polymorphism (SNP) arrays were used to genotype the RILs and parents. In addition, the 660K SNP array was used to genotype bulked extreme pools and parents for saturation mapping. Four stable QTL were detected in all tested environments using inclusive composite interval mapping (ICIM); namely QYrCEN.nwafu-4AL, QYrCEN.nwafu-4BS, QYrCEN.nwafu-7BL, and QYrCEN.nwafu-7DS. QYrCEN.nwafu-4BS and QYrCEN.nwafu-7DS were contributed by MX169, QYrCEN.nwafu-4AL and QYr-CEN.nwafu-7BL were contributed by Centrum. QYrCEN.nwafu-7BL and QYrCEN.nwafu-4AL appear to represent new APR loci based on map comparisons. QYrCEN.nwafu-4BS contributed by MX169 also seems to represent a new locus. QYrCEN.nwafu-7DS is likely Yr18. Although MX169 was fully susceptible in our nurseries it is positive for the widely used marker csLV34. Reference lines carrying Yr18 are moderately resistant. Our hypothesis is that MX169 probably carries the inhibitor reported in Chinese landrace varieties by Wu et al. (2015, Plant Breeding 134: 634-640). SNP markers within these QTL were converted to KASP markers and validated in a subset of 120 diverse lines. These KASP markers should be useful for marker-assisted selection to improve stripe rust resistance in breeding programs.


Characterization of wheat germplasm for leaf rust resistance using molecular markers and multi-location field testing

BGRI 2018 Poster Abstract
Muhammad Ismail The University of Agriculture, Peshawar, Pakistan
Muhammad Khan, Aamir Iqbal, Sher Nawab, Sohail Ahmed, Muhammad Imtiaz, Sajid Ali

Resistance breeding for wheat leaf rust requires testing of breeding materials under field conditions, which must be complemented with diagnostic molecular makers. A set of 28 exotic wheat lines from advanced CIMMYT material along with three check varieties (Siran, Atta-Habib, Ghanimat-e-IBGE) were tested at three contrasting locations (Peshawar, Mansehra and Lakki-Marwat) and were genotyped with markers linked to three Lr genes (LrPr, Lr37, and Lr34). The overall leaf rust pressure was low during the wheat season of 2015-16, with the maximum disease observed at Lakki-Marwat (up to 70%), followed by Peshawar (up to 50%) and the minimum disease at Mansehra (up to 30%). Despite the overall low leaf rust pressure, the germplasm behaved variably in terms of leaf rust resistance as revealed through average co-efficient of infection (ACI). According to ACI value, 16 out of 28 genotypes were completely resistant, while few genotypes showed partial resistance. The maximum CI value was recorded for wheat line W-SA-87, which was 55 at Lakki Marwat, 33 at Peshawar and 15 at Mansehra, while 18 lines had CI value of zero across the three locations. Variability existed in yield parameters with W-SA-84, W-SA-78 and W-SA-79 producing the better grain yield. Genotyping with Lr linked markers viz., STS-7 (LrPr), SC-Y15 (linked with Lr37) and csLV34 (linked with Lr34) revealed that among the tested lines LrPr was the most frequent (83.8%), present in 26 lines; followed by Lr37 (77.4%), present in 24 lines, while Lr34 was present in 16 lines (71.1%). All three genes were detected in 45% of the germplasm. Cluster analysis grouped the germplasm in four clusters based on both phenotypic and molecular markers data. The information generated in the present study would be valuable in resistance breeding for a better control of leaf rust disease in Pakistan.


A new warrior race of Puccinia striiformis f.sp tritici in Syria

BGRI 2018 Poster Abstract
Mohammad Kassem Aleppo University, Aleppo , Syria
Bassam,Souliman, Naem, Al-Housien, Mohammad Shafick, Hakiem, Miloudi.M, Nachit, , , , , , , , , , , , , , , , , , , , , ,

Wheat yellow rust, caused by Puccinia triticina f. sp. tritici, is the major problem in wheat production in most parts of West Asia. Monitoring of the pathogen virulence factors and their changes provides basic information for the development of an early warning system. Wheat yellow rust has become increasingly important in the Syrian central and coastal areas during the last three years, The objective of this study was to identify races of the pathogen. Yellow rust samples collected at sites in the central and the coastal plains, were analyzed on differential host genotypes with known seedling resistance genes. According to the results of race determination, races 230E150, 166E150, 230E142 and 462E128 were identified. The race 462E128 designated the Warrior race, was identified at several sites across the Syrian central plains at the end of the 2017 growing season (early and Mid-May) when yellow rust exploded suddenly on a number of varieties, despite their previous high resistance ratings. The infections rapidly reached significant levels, in spite of the high temperature (up to 33?C) and the absence of rainfall or irrigation. This new virulent race (462E128) has been able to attack wheat lines with several major resistance gene(s) including: Spaldings Prolific (SP), Yr 3+4, Triticum spelta (Yr5), which remained effective until 2016 in Syria, Virulence to lthe resistance genes Yr1, Yr2, Yr2+, Yr3V, Yr3ND, Yr4+, Yr6, Yr6+, Yr7, Yr7+, Yr9, Yr9+, Yr11, Yr12, Yr18, Yr24, Yr26 Spaldings Prolific (YrSP), Anza (YrA+) Spaldings Prolific (SP), Yr 3+4, Triticum spelta (Yr5) and Selkirk (YrSK) was also found. Virulence to Carstens V (CV), Yr 15/6* Avocet S and Yr 5/6* Avocet S; was not found. According to our findings, the Warrior race has increased in frequency within the mix of yellow rust races in these areas in Syria . It is expected that the Warrior yellow rust race will cause damage on resistant wheat cultivars in 2018.


MicroRNAs and their mega effects on gene expression in response to leaf rust in wheat (Triticum aestivum L.)

BGRI 2018 Poster Abstract
Summi Dutta Department of BioEngineering, Birla Institute of Technology, Mesra, Ranchi, India
Manish Kumar, Kunal Mukhopadhyay

Bread wheat (Triticum aestivum L.) being the world's most popular edible cereal, plays a major role in global economy. Rust in wheat leaves, caused by Puccinia triticina, affects grain quality and severely retards its production worldwide. Micro(mi)RNAs are considered major components of gene silencing and so have a great role to play during stress. The present study focuses on identification of miRNAs, produced by host to suppress pathogen as well as delivered by pathogens to encounter host defence mechanism. Therefore, these miRNAs may be called as leaf rust responsive microRNAs. Small RNA and degradome libraries were prepared from a pair of near isogenic lines of wheat (HD2329, HD2329+Lr24), one set was mock inoculated while the other set was inoculated with urediniospores of leaf rust pathogen. Using these libraries as input a vast number of miRNAs rather a population of miRNAs were identified derived from wheat that were targeting genes mostly involved in functions like defense response, signal transduction, development, metabolism, and transcriptional regulation.
When reads specifically produced under pathogen inoculation were taken as input with Puccinia triticina genome sequences as reference, only three putative miRNA precursor loci were detected and the molecules produced were called miRNA-like molecules as their precursors lacked one or two criteria essential for a true miRNA precursor. The identified miRNAs were targeting genes like F-box protein, MAP kinase, calmodulin and susceptible antioxidant protein. We further identified the presence of argonaute and dicer like domains in Puccinia proteome available at FungiEnsembl which strengthens presence of RNAi-like activities in Puccinia.
In addition, differential expression of wheat as well as Puccinia small RNAs using stem loop RT-PCR under varying time points of disease progression (0-168 hpi) revealed their direct connection with stress responses.


Virulence evolution of Puccinia striiformis f.sp. tritici on wheat in Kenya between 1970 to 1992 and 2009 to 2014

BGRI 2018 Poster Abstract
Mercy Wamalwa Egerton University Njoro, Kenya
Ruth Wanyera, James Owuoche, Julian Rodriguez, Annemarie Justesen, Lesley Lesley, Sridhar Bhavani, Cristobal Uauy, Mogens Hovmøller

Emergence of new virulent races of Puccinia striiformis f. sp. tritici (Pst) to stripe (yellow) rust resistance genes in wheat (Triticum aestivum L.) has historically resulted in severe yield losses worldwide. We conducted a study to characterize the virulence profiles of Pst races prevalent in Kenya from historic (1970-1992) and recent collections (2009-2014). Pst isolates collected during surveys in Kenya were characterized at the Global Rust Research Centre (GRRC), Denmark. Yellow rust differential sets (wheat lines with known Yr resistance genes), and strain-specific sequence-characterized-amplified-region (SCAR) markers were used to group the Pst isolates as Pst1 or Pst2. Virulence to Yr1, Yr2, Yr3,Yr6, Yr7, Yr8, Yr9, Yr17, Yr25, Yr27, and the seedling resistance in AvocetS were detected. A total of 12 virulence profiles /races were detected in isolates obtained during 1970 to 1992, while six races were detected from samples collected between 2009 to 2014. In both periods, races with virulence profiles Yr2, Yr6, Yr7, Yr8, Yr25, Yr27, Avs and Yr2, Yr6, Yr7, Yr8, Yr17, Yr25, AvS were common. The SCAR results revealed that both Pst1 and Pst2 strains were present in the Pst isolates tested, Pst1 even in isolates from the 1970s. Additional isolates were also identified with neither Pst1 nor Pst2 profiles. From our findings, race analysis is key to understand the race diversity and pre-breeding efforts for effective resistance gene deployment.


Survey of wheat stem rust Puccinia graminis f. sp. tritici in Jordan

BGRI 2018 Poster Abstract
Kholoud Alananbeh The University of Jordan
Ayed Al Abdallat, Monther Tahat

Studies on whet stem rust (WSR) in Jordan are considered to be old. There was only one study conducted in the late 1980's by Abu-Blan and Duwayri (1989) to evaluate the infection of wheat cultivars with black stem rust disease (Puccinia graminis f. sp. tritici). Recently, reports of stem rust were published in Israel and Lebanon in 2010 and first report of Ug99 was reported in Egypt in 2014. The objectives of our research are to: (i) survey wheat growing areas for WSR in Jordan during the years 2017-2020, (ii) identification of WSR races isolated from Jordan morphologically and molecularly, (iii) analyze rust populations in terms of their response to known differential sets, pathotype distribution and diversity, (iv) screening the response of Jordanian wheat germplasm to the identified WSR strains, and (vi) study the population diversity of WSR races using RT-PCR and SNP genotyping. In 2017 a total of 270 fields of wheat and barley in the wheat and barley growing areas in Jordan were surveyed from March-May. The survey covered northern, middle, and southern parts of Jordan (arid and semi-arid regions). Altitude, longitude, and latitude data was recorded. Only few WSR pustules (n=4) were collected because the environmental conditions were not suitable for the disease to develop. On the other hand, wheat stripe rust was very common in the wheat growing areas mainly at the southern parts of the country. Other fungal plant pathogens were also reported including smuts, spots, blotches, powdery mildew, crown rot, fusarium head blight, and flag smut.


Genetic analysis for yield and its components in Afghan bread wheat

BGRI 2018 Poster Abstract
Mohammad Bahman Sadeqi Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-University of Bonn
Mohammad Wali,Salari, Kobra, Yusefi, Mohammad, Yusefi, Gul Mohammad, Ajir, Wakil Ahmad, Sarhadi, Jens, L?on, , , , , , , , , , , , , , , , , ,

Bread wheat is a staple food in Afghanistan. Breeding for improving yield and its components in Afghan bread wheat without using new molecular methods such as marker-assisted selection (MAS) and quantitative trait loci (QTL) mapping approaches is difficult. Therefore study of genetic analysis by focus on yield and its components as first steps is necessary. Genetic analyses were performed on a winter wheat core collection of 20 accessions and commercial varieties sampled from different regions of Afghanistan and twenty agronomic traits were evaluated over three years under fully irrigated, rain-fed and drought treatments. Grain yield was the most important trait to water deficit and was highly correlated with other agronomic traits. The germplasm was structured into two sub-populations. Field plots of the genotypes were treated to one of three treatments including full irrigation, rain supplied and rain-sheltered. A randomized complete block design with three replicate was used every year of the trial. For every agronomic trait, variance components, heritability (h2) and genetic correlations was calculated. Results of the study showed that these genotypes may be good source for national breeding programs. The multiple statistical in this study showed that results of genetics correlation and regression analysis are same. Further analysis of these traits with additional experimental data to attain persuasive conclusion is suggested.


Contribution of international nurseries for selection of rust resistant wheat varieties in Tajikistan

BGRI 2018 Poster Abstract
Hafiz Muminjanov Food and Agriculture Organization of the UN
Munira Otambekova, Bahromiddin Husenov, Alexei Morgounov

Wheat as a staple food crop in Tajikistan plays a crucial role for food security of population. However its production is threatened by number of limiting factors, and among them wheat rusts are most devastating disease.
Close collaboration of local scientists and breeders was established with International Agricultural Research Centers, including CIMMYT and ICARDA since early 2000. In the result, a number of high yielding and rust resistant varieties were released in Tajikistan that occupy presently about 40% of total wheat area.
Among the major breeding objectives selection of varieties with high resistance to wheat rusts, especially yellow rust considered as a priority task. The following new varieties originated from CIMMYT international nurseries were released in the country in past years, which bear high resistance to yellow rust: Sarvar (CHEN\AEGILOPS SQUARROSA (TAUS0//BCN/3/BAV92), Yusufi (SOROCA), Vahdat (VORONA SN079), Isfara (SW89.5181/KAUZ), Fayzbaksh (TAM200.KAUZ) and Shokiri (SHARK/F4105W2.1).
During the last three years eight new varieties were submitted for official testing, and two of them already are released in 2017 (Murodi and Durakhshon) and remaining ones are under official testing. The varieties and their origin are followings: Murodi (CHEN/AE.SQ//WEAVER/3/SSERI1), Durakhshon (ATTILA/3*BCN*2//BAV92), Kamol (PYN/BAU//LAGOS-19/3/ID800994.W/VEE), Zarnisor (CROC_1/AE.SQUARROSA(205)//BORL95/3/2*MILAN), Ganj (NAC/TH.AC//3*PVN/3/MIRLO/BUC/4/2*PASTOR), Mehrgon (SAAR/WAXWING), Sipar (FRET 2*2/4/SNI/TRAP #1/3/KAUZ*2/TRAP//KAUZ/5) and Lochin (PJN/BOW//OPATA*2/3/CROC_1/AE.SQ.(224)).


Monitoring for wheat blast and rust pathogens in different agro-ecological zones of Punjab, Pakistan

BGRI 2018 Poster Abstract
Muhammad Makky Javaid Ayub Agricultural Research Institute, Faisalabad, Pakistan
Muhammad,Idrees, Faqir, Muhammad, Arshad, Mehmood, Majid, Nadeem, Saleem-ur, Rehman, Makhdoom, Hussain, Javed, Ahmad, , , , , , , , , , , , , , , ,

Under changing climatic conditions, the emergence of new diseases or new races of existing diseases is a serious threat to global wheat production. Particularly, the presence of wheat blast in Bangladesh and stem rust race Ug99 in Iran, created a fearsome and intractable situation for Pakistan. A study was planned for monitoring and surveillance of the wheat blast and rust pathogens in wheat growing districts of Punjab, Pakistan during the cropping season 2016-17 as vigilance program. During the survey, one hundred and seventy one wheat fields of upper and central Punjab region were monitored and two types of Rusts (Leaf Rust & Yellow Rust) were recorded in varying intensity on different varieties of wheat. Out of 171 locations 86 spots were free from both types of rusts i.e. Leaf Rust & Yellow Rust, while the remaining locations were found to be infected with both leaf and yellow rust. However, all the surveyed fields were free from the stem rust infestation. Among the infected fields, 23 were infected by Leaf Rust while 63 fields were infected by Yellow Rust.The susceptible type of rust attack was noticed on old/ banned/ unapproved wheat varieties. Moderately resistant to resistant reaction was observed on newly approved varieties. The rust infected samples having S or MS type infection were collected for race analysis. Similarly, blast suspected samples were analyzed in laboratory and none of the tested samples showed the presence of wheat blast pathogen, which indicates no need to panic but vigilant in future.


Mining of hulled wheat species for yield gain in bread wheat (Triticum aestivum L.)

BGRI 2018 Poster Abstract
Vikas Venu Kumaran ICAR-Indian Agricultural Research Institute, Regional Station, Wellington, The Nilgiris, Tamilnadu, India
SIVASAMY,MURUGASAMY, JAYAPRAKASH, PARAMASIVAM, RAJESH KUMAR, MEENA, , , , , , , , , , , , , , , , , , , , , , , ,

Emmer wheat (Triticum dicoccum L.), tetraploid species (AABB) and spelt wheat (Triticum spelta L.), hexaploid species (AABBDD) are old world hulled wheat species cultivated centuries ago in different parts of the world. These species were later replaced by higher yielding bread and durum wheat in the last centuries. Grain yield is influenced by grain number per unit area and grain size which correlates positively with grain weight. Increasing the grain number was extensively and intensively explored in the past 100 years of wheat breeding which has nearly reached to saturation and leaves little room for further yield increase due to grain number?grain size trade off. Grain size/grain weight is believed to be major driving force for further improvement of wheat yield. Both the species have been characterised with larger grain size and higher grain weight; therefore an ideal source to improve the grain size/grain weight while maintaining the grain number per spike in the cultivated bread wheat. A total of 25 accessions each of emmer and spelt wheat with good grain size and weight were crossed with 5 elite bread wheat lines. In the F2 generation, recombinant lines with good grain size, higher grain weight and grains number were further backcrossed with bread wheat. Stable lines with free threshing were obtained at BC4F4 generations and were analysed for quality. Thousand grain weight (TGW) and harvest index (HI) ranged from 46-55g and 0.47-0.58 in stable lines respectively. Stable lines yielded 16-21% than the high yielding check while number of grains per spike was maintained as that of check. Stable lines involving spelt crosses have higher grain size, TGW and HI than emmer wheat crosses. Stable lines could be released directly as cultivar or else used as one of the parents in the wheat improvement programme.