All BGRI Abstracts

Displaying 31 - 40 of 416 records | 4 of 42 pages

Wheat stem rust pathogen (Pgt) Identification and Characterization in Egypt using Single Nucleotide Polymorphism (SNP) markers.

BGRI 2018 Poster Abstract
Samar Mohamed Esmail Wheat Dis. Res. Dept., Plant Pathol. Res. Inst., A.R.C., Sakha, Egypt
Les John Szabo

Stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), is one of the most serious disease of wheat worldwide. The discovery of new Pgt races in Africa, Ug99 and its variants, brings a new threat to global wheat production. In this study, 50 single pustule stem rust samples, were collected during 2015-2016 from the International Stem rust Trap Nursery (ISRTN) and commercial wheat fields in Sakha, the most important wheat growing region in Egypt. SNP-genotyping was carried out at USDA-ARS Cereal Disease Laboratory. Infection and genotype data confirmed that none of these samples belonged to the Pgt Ug99 race group. Forty-five samples were successfully genotyped consisting of 12 multi-locus genotypes (MLGs). The majority (86.7%) of the samples belonged to three clades: 10 samples, clade III-B (MLG.04, race TTRTF) collected from Misr 3, Sakha 95 and Sids 14 wheat lines; 12 samples, clade IV-A.2 (MLG.06, race TKTTF) collected from Sr 5, Sr6, Sr7a, Sr7b, Sr8b, Sr9a, Sr9e, Sr10, Sr11, Sr15, Sr16 and Sr17 wheat lines; 17 samples, clade IV-E.2 (MLG.11, race TKKTF) from Sr13, Sr14, Sr19, SrMcN, Sr24, Misr 1, Misr 2, Sakha95 and Sids 12 wheat lines. Pgt samples belonging to clades IV-A.2 and IV-E.2 have been observed from Europe to the Middle East, and samples from clade III-B from the southern Caucasus Mountains, Middle East to northeast Africa. The remaining six samples collected from Sr12, Sr18, Sr20, Sr21, Sr22 and Sr25 wheat lines represent two new genotypes (MLG.14 and MLG.17) that have not been assigned to clades. MLG.14 was also observed in samples from Azerbaijan, Iraq and Eritrea. In contrast, this represents the first detection of MLG.17. These results suggest continued variability of the Pgt population in Egypt therefore, emphasizing the importance regularly monitoring to timely identify new races, and utilize this information in screening and identification of effective sources of resistance.


Emerging private sector involvement in wheat seed research and production in India

BGRI 2018 Poster Abstract
Venugopal Chintada Sathguru Management Consultants
Kanan,Vijayaraghavan, Vijay, Paranjape, Richa, Kapur, Vignesh, Vilayanur Jayaraman, , , , , , , , , , , , , , , , , , , , , ,

Wheat is one of the most important food crops of the world. India is the second largest producer of wheat, currently producing 95 million tons from about 30 million hectares. Looking ahead to 2050, India needs to constantly increase production to about 150 million tons, to meet the rising population and demand. With area under cultivation having no room for growth, productivity will be the main pillar for growing production. Currently India?s yield of 3.1 t/ha has plenty room for growth as compared to the world leaders such as France (7.5 t/ha), Germany (7.3 t/ha) and UK (6.6 t/ha). Wheat productivity depends on multiple factors, seed being one of the most important.
The current operating environment is characterized by wheat R&D in the country conducted by public institutes, but there are clear signs of an emerging private sector involvement. The government promoting Inter-institutional linkages by way of associating private players in research and seed production.
This study evaluates and reflects on the current situation of the wheat seed sector in India - from research, variety/hybrid development, seed production, indent to distribution, the players involved, the challenges therein, upcoming technologies and the way forward.


Molecular and field based characterization of yellow rust resistance in wheat germplasm across locations in Pakistan

BGRI 2018 Poster Abstract
Aamir Iqbal The University of Agriculture, Peshawar, Pakistan
Muhammad Khan, Muhammad Ismail, Sher Nawab, Abdullah Jalal, Muhammad Imtiaz, Sajid Ali

Rust disease response is used to assess the resistance status of breeding lines, which is required to be tested across location and complemented with molecular markers. The current study was designed to characterize yellow rust resistance in 29 introduced advanced CIMMYT wheat lines along with three check varieties across three contrasting wheat growing regions (Peshawar, Mansehra and Lakki-Marwat) during wheat season 2015-16. A high disease pressure was observed across all three locations as favorable cold and wet climatic conditions prevailed during 2015-16. The maximum disease was recorded at Mansehra (up to 90%) followed by Peshawar (up to 50%) and Lakki-Marwat (up to 45%). There was a significant variability amongst the tested wheat lines for yellow rust severity and in yield potential. Among the advanced lines, W-SA-104, W-SA-115 and W-SA-118 had better grain and biological yield. Based on disease and yield parameters, cluster analysis of 29 wheat lines along with three checks grouped wheat lines into four clusters. None of these wheat lines showed resistance at every location (Average coefficient of infection "ACI" = 0). The maximum co-efficient of infection (55) was recorded at Mansehra whereas the minimum (0) was recorded at Peshawar and Lakki-Marwat. Twenty-six of these wheat lines were identified to possess partial resistance to yellow rust (with ACI < 20). Genotyping for the presence of resistance gene markers STS-7 (linked with Yr5), SC-Y15 (linked with Yr17) and Xwmc-44 (linked with Yr29) revealed the highest frequency of Yr17 (90.60%), followed by Yr29 (87.5%) and Yr5 (50%). The three resistant genes together were present only in 15 wheat lines (46.87%). Our results thus revealed the presence of variation in resistance response based on both field testing and molecular markers which could be utilized in wheat breeding to develop better resistance varieties to be exploited at field level.


Expansion of genetic diversity for winter wheat and selection of new sources of resistance to leaf and stripe rust in South-East

BGRI 2018 Poster Abstract
Gulnura Suleimanova Kazakh National Agrarian University
Yerlan Dutbayev, Alexei Morgounov

Kazakhstan is among the ten largest grain exporters in the world. Winter wheat in Kazakhstan is mainly cultivated in the southern and south-eastern regions on an area of 1.5-2 million hectares, including 140-170 thousand hectares - in irrigated lands. Annual losses of wheat yield from diseases can reach up to 30-40% or more. For Kazakhstan, the most dangerous diseases of winter wheat are stripe rust and leaf rust. Work is under way in Kazakhstan to find new donors for resistance to leaf rust and stripe rust and the use of these donors in breeding. The aim of this research was to expand genetic diversity through crosses and development of lines obtained by the method of remote hybridization, as well as selection of new sources of resistance of bread wheat to leaf rust and stripe rust in southeast Kazakhstan. The subject of the research were 49 hexaploidsynthtic lines of Kyoto University (Japan) and CIMMYT and commercial varieties of winter wheat in the Almaty region. We screened synthetic hexaploid wheat for resistance to diseases. A collection of hexaploid synthetic wheat lines resistant to the diseases and adapted to various conditions of the Almaty region has been established. The character of inheritance of resistance to diseases in crosses of synthetic wheat with local cultivars based on comparison of the first generation and parents was studied. Evaluation of phenotypes inheritance of resistance in hybrids in the generation of F2, showed that 9crosses of synthetic wheat(LANGDON/IG 48042//ZHETISU, LANGDON/IG 48042//FARABI, LANGDON/KU-20-8//AJARLY, LANGDON/KU-2075//AJARLY, LANGDON/KU-2097// ZHETISU, LANGDON/KU-2075//FARABI, LANGDON/KU-2100//STEKLOV, LANGDON/KU-2144//NAZ, LANGDON/KU-2076//NAZ)possess the dominant resistance genes to leaf rust.Seven lines(LANGDON/ KU-2075/AJARLY, LANGDON/KU-2075/FARABI, LANGDON/KU-2092/FARABI, LANGDON/KU-2100/NAZ, LANGDON/KU-2097/STEKLOVINDAYA, LANGDON/KU-2097/ZHETISU, LANGDON/KU-2097/ AJARLY) possess from one to several dominant resistance genes to stripe rust.


MicroRNAs and their mega effects on gene expression in response to leaf rust in wheat (Triticum aestivum L.)

BGRI 2018 Poster Abstract
Summi Dutta Department of BioEngineering, Birla Institute of Technology, Mesra, Ranchi, India
Manish Kumar, Kunal Mukhopadhyay

Bread wheat (Triticum aestivum L.) being the world's most popular edible cereal, plays a major role in global economy. Rust in wheat leaves, caused by Puccinia triticina, affects grain quality and severely retards its production worldwide. Micro(mi)RNAs are considered major components of gene silencing and so have a great role to play during stress. The present study focuses on identification of miRNAs, produced by host to suppress pathogen as well as delivered by pathogens to encounter host defence mechanism. Therefore, these miRNAs may be called as leaf rust responsive microRNAs. Small RNA and degradome libraries were prepared from a pair of near isogenic lines of wheat (HD2329, HD2329+Lr24), one set was mock inoculated while the other set was inoculated with urediniospores of leaf rust pathogen. Using these libraries as input a vast number of miRNAs rather a population of miRNAs were identified derived from wheat that were targeting genes mostly involved in functions like defense response, signal transduction, development, metabolism, and transcriptional regulation.
When reads specifically produced under pathogen inoculation were taken as input with Puccinia triticina genome sequences as reference, only three putative miRNA precursor loci were detected and the molecules produced were called miRNA-like molecules as their precursors lacked one or two criteria essential for a true miRNA precursor. The identified miRNAs were targeting genes like F-box protein, MAP kinase, calmodulin and susceptible antioxidant protein. We further identified the presence of argonaute and dicer like domains in Puccinia proteome available at FungiEnsembl which strengthens presence of RNAi-like activities in Puccinia.
In addition, differential expression of wheat as well as Puccinia small RNAs using stem loop RT-PCR under varying time points of disease progression (0-168 hpi) revealed their direct connection with stress responses.


Wheat rusts status and population structure across Pakistan during wheat growing seasons 2015-16 and 2016-17

BGRI 2018 Poster Abstract
Sajid Ali The University of Agriculture, Peshawar, Pakistan
Muhammad,Khan, Safi, Kathi, Zahoor, Swati, Manzoor, Hussain, Annemarie, Justesen, Muhamamd, Imtiaz, , , , , , , , , , , , , , , , , ,

Considering the importance of wheat rust diseases in Pakistan and the recent identification of yellow rust pathogen (Puccinia striiformis f. sp. tritici) centre of diversity in Pakistan, the present study was designed to assess the status of three wheat rusts across the country during 2015-16 and 2016-17 and analyze the population structure of P. striiformis f. sp. tritici . A total of 451 fields (from 68 districts) were surveyed during 2016 and 480 fields (from 69 districts) during 2017. A high yellow rust pressure was present during 2016 throughout Pakistan, while it was predominant only in the Northern half during 2017. Leaf rust was present in the central part of the country, while stem rust was only found in the south. In Sindh province (located in the south), yellow rust was reported unexpectedly with high severity (>60%) on varieties like Kiran and Galaxy during both the years. A set of 513 samples of P. striiformis were genotyped with microsatellite markers to assess the population diversity and spatial structure. and infer on the cause of epidemics in the Sindh province. Population genetics analyses confirmed a recombinant population structure across all locations except the Sindh province, where relatively lower diversity and lack of recombination signature was revealed. At least five genetic groups were identified in the overall population, which were found across all locations, except Sindh province where one of the genetic groups was predominant. The P. striiformis population from Sindh province with low diversity that caused unexpected epidemics in a relatively warmer region needs to be further investigated for specific adaptation traits. Our results confirmed the high diversity across Pakistan, which lies in the Himalayan centre of diversity of the pathogen. This high diversity was present in locations without the presence of alternate host (Berberis spp.) and could potentially be associated with regular migrants from the Berberis zone into the whole country.


Genetic analysis for yield and its components in Afghan bread wheat

BGRI 2018 Poster Abstract
Mohammad Bahman Sadeqi Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-University of Bonn
Mohammad Wali,Salari, Kobra, Yusefi, Mohammad, Yusefi, Gul Mohammad, Ajir, Wakil Ahmad, Sarhadi, Jens, L?on, , , , , , , , , , , , , , , , , ,

Bread wheat is a staple food in Afghanistan. Breeding for improving yield and its components in Afghan bread wheat without using new molecular methods such as marker-assisted selection (MAS) and quantitative trait loci (QTL) mapping approaches is difficult. Therefore study of genetic analysis by focus on yield and its components as first steps is necessary. Genetic analyses were performed on a winter wheat core collection of 20 accessions and commercial varieties sampled from different regions of Afghanistan and twenty agronomic traits were evaluated over three years under fully irrigated, rain-fed and drought treatments. Grain yield was the most important trait to water deficit and was highly correlated with other agronomic traits. The germplasm was structured into two sub-populations. Field plots of the genotypes were treated to one of three treatments including full irrigation, rain supplied and rain-sheltered. A randomized complete block design with three replicate was used every year of the trial. For every agronomic trait, variance components, heritability (h2) and genetic correlations was calculated. Results of the study showed that these genotypes may be good source for national breeding programs. The multiple statistical in this study showed that results of genetics correlation and regression analysis are same. Further analysis of these traits with additional experimental data to attain persuasive conclusion is suggested.


Mapping and validation of stripe rust resistance loci from wheat cultivar Centrum with SNP markers

BGRI 2018 Poster Abstract
Jingmei Mu State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi, P. R. China
Qilin,Wang, Jianhui, Wu, Qingdong, Zeng, Lili, Huang, Dejun, Han, Zhensheng, Kang, , , , , , , , , , , , , , , , , ,

The combination of several additive, partial resistance genes has been proposed as a preferred strategy to breed wheat cultivars with acceptable levels of durable resistance. The German winter wheat cv. Centrum has displayed high levels of adult plant stripe rust resistance (APR) in field environments for many years. One hundred and fifty one F2:7 RILs were developed from a cross between susceptible landrace Mingxian169 and Centrum to determine the inheritance of the APR resistance. The RILs and parents were evaluated for maximum disease severity (MDS) in the field during the 2015-2016 and 2016-2017 cropping seasons. Affymetrix 35K single nucleotide polymorphism (SNP) arrays were used to genotype the RILs and parents. In addition, the 660K SNP array was used to genotype bulked extreme pools and parents for saturation mapping. Four stable QTL were detected in all tested environments using inclusive composite interval mapping (ICIM); namely QYrCEN.nwafu-4AL, QYrCEN.nwafu-4BS, QYrCEN.nwafu-7BL, and QYrCEN.nwafu-7DS. QYrCEN.nwafu-4BS and QYrCEN.nwafu-7DS were contributed by MX169, QYrCEN.nwafu-4AL and QYr-CEN.nwafu-7BL were contributed by Centrum. QYrCEN.nwafu-7BL and QYrCEN.nwafu-4AL appear to represent new APR loci based on map comparisons. QYrCEN.nwafu-4BS contributed by MX169 also seems to represent a new locus. QYrCEN.nwafu-7DS is likely Yr18. Although MX169 was fully susceptible in our nurseries it is positive for the widely used marker csLV34. Reference lines carrying Yr18 are moderately resistant. Our hypothesis is that MX169 probably carries the inhibitor reported in Chinese landrace varieties by Wu et al. (2015, Plant Breeding 134: 634-640). SNP markers within these QTL were converted to KASP markers and validated in a subset of 120 diverse lines. These KASP markers should be useful for marker-assisted selection to improve stripe rust resistance in breeding programs.


Reaction of Bhutanese wheat cultivars and differential lines to rust diseases at mid and low altitudes in Bhutan

BGRI 2018 Poster Abstract
Sangay Chophel National Plant Protection Center
Namgay Om, Thinlay, Ugyen Yangchen

Wheat rusts are one of the important diseases that limit the production and downgrade wheat quality. Three rust diseases of wheat are stem rust caused by Puccinia graminis Pers. f. sp. tritici Eriks., stripe rust caused by Puccinia striiformis Westend. f. sp. tritici Eriks., and leaf rust caused by Puccinia triticina Eriks. This study was conducted to determine the reaction of wheat varieties to wheat rusts at different altitudes. Field experiments were conducted from December 2016 to March 2017 at Mendagang (27.5886°N, 89.8711°E, 1332 masl), Punakha Dzongkhag (district) for mid altitude and at Agriculture Research and Development Center (ARDC), Samtenling (26.9058°N, 90.4308°E, 378 masl), Sarpang Dzongkhag, Bhutan for low altitude. The experiment followed a RCBD with 15 treatments comprising of three Bhutanese released varieties, eight SAARC varieties, and four ICARDA varieties. Each treatment was replicated three times. Assessment of disease incidence and severity were performed three times starting from tillering to ripening stage, approximately at 60, 90 and 120 days after sowing (DAS). Disease severity was determined following the modified Cobb’s disease rating scale. Of the 15 varieties, only 11 germinated in both the sites. Among the three wheat rust diseases, only leaf rust was observed in both sites. Leaf rust incidences ranged from 2.5 to 10% and 2.5 to 16% at mid and low altitudes respectively. Disease severity of 5 to 20%, corresponding to field response of immune (5O) to moderately resistant (20MR), was observed at mid altitude, while 5 to 100%, with immune (5O) to susceptible (100S), was observed at low altitude. There was a significant difference in disease incidence by site (p=.038) but not in disease severity (p=.129). The variety, ICARDA 1, with 100% severity was highly susceptible (100S) to leaf rust at low altitude while Bajosokha Kaa remained immune (5O) in both the sites. The results indicate that leaf rust can occur in both low and mid altitudes; however selection of suitable varieties requires more extensive studies.


Characterization of wheat germplasm for leaf rust resistance using molecular markers and multi-location field testing

BGRI 2018 Poster Abstract
Muhammad Ismail The University of Agriculture, Peshawar, Pakistan
Muhammad Khan, Aamir Iqbal, Sher Nawab, Sohail Ahmed, Muhammad Imtiaz, Sajid Ali

Resistance breeding for wheat leaf rust requires testing of breeding materials under field conditions, which must be complemented with diagnostic molecular makers. A set of 28 exotic wheat lines from advanced CIMMYT material along with three check varieties (Siran, Atta-Habib, Ghanimat-e-IBGE) were tested at three contrasting locations (Peshawar, Mansehra and Lakki-Marwat) and were genotyped with markers linked to three Lr genes (LrPr, Lr37, and Lr34). The overall leaf rust pressure was low during the wheat season of 2015-16, with the maximum disease observed at Lakki-Marwat (up to 70%), followed by Peshawar (up to 50%) and the minimum disease at Mansehra (up to 30%). Despite the overall low leaf rust pressure, the germplasm behaved variably in terms of leaf rust resistance as revealed through average co-efficient of infection (ACI). According to ACI value, 16 out of 28 genotypes were completely resistant, while few genotypes showed partial resistance. The maximum CI value was recorded for wheat line W-SA-87, which was 55 at Lakki Marwat, 33 at Peshawar and 15 at Mansehra, while 18 lines had CI value of zero across the three locations. Variability existed in yield parameters with W-SA-84, W-SA-78 and W-SA-79 producing the better grain yield. Genotyping with Lr linked markers viz., STS-7 (LrPr), SC-Y15 (linked with Lr37) and csLV34 (linked with Lr34) revealed that among the tested lines LrPr was the most frequent (83.8%), present in 26 lines; followed by Lr37 (77.4%), present in 24 lines, while Lr34 was present in 16 lines (71.1%). All three genes were detected in 45% of the germplasm. Cluster analysis grouped the germplasm in four clusters based on both phenotypic and molecular markers data. The information generated in the present study would be valuable in resistance breeding for a better control of leaf rust disease in Pakistan.